CDS

Accession Number TCMCG017C28811
gbkey CDS
Protein Id OMO65199.1
Location complement(join(97739..98278,98448..98489,98573..98693,98846..98927,99597..99655,100565..100687,101234..101276,101372..101510))
GeneID InterPro:IPR001841
Organism Corchorus olitorius
locus_tag COLO4_31437

Protein

Length 382aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01020854.1
Definition Zinc finger, RING-type [Corchorus olitorius]
Locus_tag COLO4_31437

EGGNOG-MAPPER Annotation

COG_category O
Description E3 ubiquitin-protein ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10695        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000151        [VIEW IN EMBL-EBI]
GO:0000152        [VIEW IN EMBL-EBI]
GO:0001709        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010073        [VIEW IN EMBL-EBI]
GO:0010074        [VIEW IN EMBL-EBI]
GO:0010076        [VIEW IN EMBL-EBI]
GO:0010077        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010492        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019827        [VIEW IN EMBL-EBI]
GO:0030154        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031519        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0035102        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045165        [VIEW IN EMBL-EBI]
GO:0045814        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0048507        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0098727        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCCAGCGCAGAAGCGTTCATACGAAGCCGTCGAAGTCACCGCCACCCCGCCGGAAGACGACGATCCTCTGCTTCTCGACCACAGTAACCACCATGAACAACACCACCAAGAAGAAACCGACGATGCTGCTGATGATGAATCTGATCGCAGCCCTTCTCCTTGTCACGAACAAAAACGAGAGCTGTGGTCTATTAAGGATAAGGTGGCTTTGCCGCTCATGGGTCTTGTCTGTTTACTCTGGGTCAAGTTTCCTCTGCTTGGTTCTGGGATCTTCCTCTTGGTCTTTTTCTTACGCAACTTTATTTATGTGCTAGTAAAATTATCTGACATTCGGAAGGAAGTACAATGCCCTATCTGCCTAGGGATCATTCGCAAAACAAGAACTGTAATGGAATGCTTACATCGCTTCTGTAGAGAATGCATCGACAAATCTATGAGAATGGGAAACAACGAGTGCCCTGCTTGCCGCACACATTGTGCTAGTCGCCGGTCTTTGAGAGATGATCCTAATTATGATGCCTTAATTGCAGCCTTATATCCAGATATTGACAAATATGAGGAAGAGGAATTGGCTTTTCACGAGGAGGAGAAAGCTCGGAATAAGCAGATCCAAGCTTCCATTGCCCAAACTTTGCGCCGGCAATCAGAAGTTCTGGGTAGGAAACGAACAGTTAAAGCCACTGCATCTGCTATTGTAAGGAGATCAAAAAGTCGTCATCAAGGAAGGAGGAGATATCGACCTTCTGAACCTCGAGAGTCTGATGACAATGAGAATGCCAATGGATCTGGATGTAGAGATTCATCTTCTGTCGATGAACATCGTACTGAGGTCAAACCAAAGAGATTGCATAGATTTGGAGGTCGGTGTTCTCATCCTTCTTCAGCTGCTAGTGCAGATGGGGTTGGTGACGAAAATGACTCTGAAGTGAATAGAGAATCCTTGGGCATATCTGCAGCACTTTTTTTGCAAGAAAGGCTTCATTGGGGAGCAGGTGGCATGCGTAGTAACACCCGACATGGCAGTTTAAATGGTGGAAATGGAAAAAATTCTCGAAGTAGTCGTCTCTCCAAGTTGGTGGATCGTCTCCGGAACTTAGAGGAGAAGGATAATAATGAGGTAAAGTTGATCCTTCTCTGGTCATCTTAA
Protein:  
MPAQKRSYEAVEVTATPPEDDDPLLLDHSNHHEQHHQEETDDAADDESDRSPSPCHEQKRELWSIKDKVALPLMGLVCLLWVKFPLLGSGIFLLVFFLRNFIYVLVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEKARNKQIQASIAQTLRRQSEVLGRKRTVKATASAIVRRSKSRHQGRRRYRPSEPRESDDNENANGSGCRDSSSVDEHRTEVKPKRLHRFGGRCSHPSSAASADGVGDENDSEVNRESLGISAALFLQERLHWGAGGMRSNTRHGSLNGGNGKNSRSSRLSKLVDRLRNLEEKDNNEVKLILLWSS